species:   Clros
pid:       PID2216
parent:    cro-mir-36
paralog:   b
locus:     CADEHS020000106.2:298126-298214
matures:   ['UCAAACACAAUUAGCGGUC', 'CCGCUAAUUGUGUUUGAGA']
srr:       ERR5960111
genome:    /Users/jax/+Genomes/Fungal_genomes/Clros.GCA_902827195.2_C_rosea_IK726_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5960111.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5960111.cram CADEHS020000106.2:298126-298214

408 out of bounds
726 alignments
274 proper strand
253 stranded perfect matches

*******************                                                ********************* 
UCAAACACAAUUAGCGGUCUAUACCCAACUUUUCCAAAAAUUUUCCAGAGUGGAAGGUUUGGGUAUAGACCGCUAAUUGUGUUUGAGAU
((((((((((((((((((((((((((((.(((((((..............))))))).))))))))))))))))))))))))))))...
UCAAACACAAUUAGCGGUC---------------------------------------------------------------------- l=19 a=147 c
---------------------------------------------------------------------CCGCUAAUUGUGUUUGAGA- l=19 a=0 c*
UCAAACACAAUUAGCGGUC---------------------------------------------------------------------- l=19 a=147 ma
---------------------------------------------------------------------CCGCUAAUUGUGUUUGAGA- l=19 a=0 ma*

-------------------------------------------------------------------GACCGCUAAUUGUGUUUGAaA- l=21 a=1 
-----------------------------------------------------------------UAGACCGCUAAUUGUGUUU----- l=19 a=1 
-----------------------------------------------------------------UAGACCGCUAAUUGUGUUUG---- l=20 a=2 
-----------------------------------------------------------------UAGACCGCUAAUUGUGUUUGAG-- l=22 a=2 
---------------------------------------------------------------UAUAGACCGCUAAUUGUGUUU----- l=21 a=1 
--------------------------------------------------------GUUUGGGUAUAGACCGCUAc------------- l=20 a=1 
----------------------------------------UUUUCCAGAGUGGAAGGUUUGGGUAUAGACCGa---------------- l=33 a=1 
----------------------------------------UUUUCCAGAGUGGAAGGUUUGGGUAUAGACCGCUAu------------- l=36 a=3 
--------------------------------------AAUUUUCCAGAGUGGAAGGUUUGG--------------------------- l=24 a=2 
--------AAUUAGCGGUC---------------------------------------------------------------------- l=11 a=2 
-------CAAUUAGCGGUCU--------------------------------------------------------------------- l=13 a=1 
-------CAAUUAGCGGUCUAUACCCAACUUUUCCAAAAAUUUUCCAGAGUGGAAGGU------------------------------- l=51 a=1 
-----CACAAUUAGCGGUCU--------------------------------------------------------------------- l=15 a=3 
--AAACACAAUUAGCGGUC---------------------------------------------------------------------- l=17 a=2 
--AAACACAAUUAGCGGUCUAUA------------------------------------------------------------------ l=21 a=1 
UCAAACACAAUUAGCGG------------------------------------------------------------------------ l=17 a=1 
UCAAACACAAUUAGCGGU----------------------------------------------------------------------- l=18 a=4 
UCAAACACAAUUAGCGGUC---------------------------------------------------------------------- l=19 a=147 (c,ma)
cCAAACACAAUUAGCGGUC---------------------------------------------------------------------- l=19 a=1 
UCAAACACAAUUAGCGGUCU--------------------------------------------------------------------- l=20 a=74 
UCAAACACAAUUAGCGGUCa--------------------------------------------------------------------- l=20 a=6 
UCAAACACAAUUAGCGGUCaA-------------------------------------------------------------------- l=21 a=4 
UCAAACACAAUUAGCGGUCUA-------------------------------------------------------------------- l=21 a=8 
UCAAACACAAUUAGCGGUCgA-------------------------------------------------------------------- l=21 a=1 
UCAAACACAAUUAGCGGUCUg-------------------------------------------------------------------- l=21 a=2 
UCAAACACAAUUAGCGGUCUAU------------------------------------------------------------------- l=22 a=1 
UCAAACACAAUUAGCGGUCUAgA------------------------------------------------------------------ l=23 a=1 

mb-01111
ax-1011001
ku-11
ss-101010011110
fn-101
